DIVISION NEWS
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Special Seminar: Anshul Kundaje, PhD – “Using deep learning models to debug regulatory genomics experiments and decode cis-regulatory syntax”
BWH Computational Pathology Special Seminar Title: Using deep learning models to debug regulatory genomics experiments and decode cis-regulatory syntax Speaker: Anshul Kundaje, PhD Affiliation: Stanford University Position: Associate Professor, Genetics […]
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Nature Medicine Publications detail Mahmood Lab’s Design of AI Foundation Models to Advance Pathology
Two foundation models for pathology AI developed by the Mahmood Lab published in Nature Medicine: UNI and CONCH. Foundation models, advanced artificial intelligence systems trained on large-scale datasets, hold the […]
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March ABC Seminar: Andrew H. Song – Brigham and Women’s Hospital – “Towards 3D pathology – The opportunities and challenges”
Human tissue, which is inherently three-dimensional (3D), is traditionally examined through standard-of-care histopathology as limited two-dimensional (2D) cross sections that can poorly represent the tissue due to sampling bias. To […]
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February ABC Seminar: Vitalii Kleshchevnikov, PhD – Wellcome Sanger Institute – “Probabilistic models to resolve cell identity and tissue architecture”
Cell identity drives cell-cell communication and tissue architecture and is in return regulated by cell-extrinsic cues. Cell identity is determined by the combination of intrinsic developmentally established transcription factor use […]
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January ABC Seminar: Efrat Muller – Tel Aviv University – “Methods for integrating metagenomics and metabolomics data”
The human gut microbiome, and its metabolic activity in particular, have been implicated in a wide range of disease states, including metabolic disorders, inflammatory bowel diseases, and colorectal cancer. This […]
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December ABC Seminar: Miriam Adler, PhD – Hebrew University
Fibrosis is a pathology of excessive scarring which causes morbidity and mortality worldwide. Fibrosis is a complex process involving thousands of factors, therefore, to better understand fibrosis and develop new […]
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November ABC Seminar: Gennady Gorin, PhD – CalTech
Stochastic foundations for single-cell RNA sequencing Single-cell RNA sequencing, which quantifies cell transcriptomes, has seen widespread adoption, accompanied by a proliferation of analytic methods. However, there has been relatively little […]
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Gerber Lab awarded $3.1 Million Five Year NIH-NIGMS R35 Grant “Probabilistic deep learning models and integrated biological experiments for analyzing dynamic and heterogeneous microbiomes”
This work will leverage deep learning technologies to advance the microbiome field beyond finding associations in data, to accurately predicting the effects of perturbations on microbiota, elucidating mechanisms through which […]
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2023-24 ABC Seminar Speakers Announced
Developed by the Computational Pathology Division at Brigham and Women’s Hospital, the Advanced Biomedical Computation (ABC) Seminar, held monthly during the academic year, showcases innovative research from around the globe by up-and-coming […]
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Mahmood receives 2023 Young Mentors Award from Harvard Medical School
Faisal Mahmood, PhD received the 2023 Young Mentor Award from Harvard Medical School for his outstanding contributions to mentorship. The Young Mentor Award is one of several Excellence in Mentoring […]