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Advanced Biomedical Computation (ABC) Seminar Series

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Weiruo Zhang, PhD, Stanford University-“Integrative spatial-omics analysis of cellular architecture mediating lymph node metastasis in head and neck cancer”

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Spatial biology is a new frontier that has become accessible through advances in spatial profiling technologies, such as multiplexed in situ imaging spatial proteomics, which can provide single-cell resolution up to 60 markers. In this talk, I will introduce a computational analysis pipeline that performs integrative analysis of spatial proteomics and single-cell RNA sequencing to […]

Gennady Gorin, California Institute of Technology – “Stochastic foundations for single-cell RNA sequencing”

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Single-cell RNA sequencing, which quantifies cell transcriptomes, has seen widespread adoption, accompanied by a proliferation of analytic methods. However, there has been relatively little systematic investigation of its best practices and their underlying assumptions, leading to challenges and discrepancies in analysis. I motivate a set of generic, principled strategies for modeling the biological and technical […]

Jean Du Terrail, PhD, Owkin – “Federated Learning in Healthcare in the Real-World: Examples and Practical Challenges”

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With the never-ending revolutions of data-driven approaches that started already more than a decade ago it is surprising at first that the pace of ML discoveries in medicine seems substantially slower than the ones found in consumer applications such as ChatGPT. The answer to that paradox is relatively simple: in healthcare, data is hard to […]

ABC Seminar TBD

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Speaker will be updated soon.