Microbiome studies hold tremendous potential along with substantial computational challenges. I will present two computational approaches for microbiome data analysis. First, I will present SCRuB, a new method for in silico removal of contamination from microbiome data. We show that modeling the taxonomic composition of contamination sources, rather than trying to infer whether specific taxa […]
Spatial biology is a new frontier that has become accessible through advances in spatial profiling technologies, such as multiplexed in situ imaging spatial proteomics, which can provide single-cell resolution up to 60 markers. In this talk, I will introduce a computational analysis pipeline that performs integrative analysis of spatial proteomics and single-cell RNA sequencing to […]
Speaker: Bokai Zhu, PhD Affiliation: Ragon Institute of MGH, Harvard and MIT, Broad Institute, MIT Position: Postdoctoral Research Fellow Host: Muhammad Shaban, PhD - Mahmood Lab Date: Monday September 23, 2024 Time: 1:00-2:00PM ET In person: Duncan Reid Conference Room (directions below) Zoom: https://partners.zoom.us/j/82163676866 Meeting ID: 821 6367 6866 Abstract: Advancements in single-cell and spatial-omics […]
Title: Sequence modeling from molecular to genome scale with Evo Speaker: Brian Hie, PhD Affiliation: Stanford University, Chemical Engineering and Data Science Position: Assistant Professor Host: Jiening Zhu, PhD – Gerber Lab Date: Monday November 18, 2024 Time: 4:00-5:00PM ET Zoom: https://partners.zoom.us/j/82163676866 Meeting ID: 821 6367 6866 Abstract: The genome is a sequence that encodes […]